ggpicrust2 - Make 'PICRUSt2' Output Analysis and Visualization Easier
Provides a convenient way to analyze and visualize 'PICRUSt2' output with pre-defined plots and functions. Allows for generating statistical plots about microbiome functional predictions and offers customization options. Features a one-click option for creating publication-level plots, saving time and effort in producing professional-grade figures. Streamlines the 'PICRUSt2' analysis and visualization process. For more details, see Yang et al. (2023) <doi:10.1093/bioinformatics/btad470>.
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microbiomemetagenomicssoftware16s-rrnabioinformaticsdata-visualizationdifferential-abundancefunctional-datafunctional-predictionggplot2gut-microbiomekeggmetagenomic-analysismicrobiotapathway-analysisphyloseqpicrust2tax4fun2visualization
9.62 score 194 stars 162 scripts 1.5k downloadsmLLMCelltype - Cell Type Annotation Using Large Language Models
Automated cell type annotation for single-cell RNA sequencing data using consensus predictions from multiple large language models. Integrates with Seurat objects and provides uncertainty quantification for annotations. Supports various LLM providers including OpenAI, Anthropic, and Google. For details see Yang et al. (2025) <doi:10.1101/2025.04.10.647852>.
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bioinformaticscell-type-annotationcomputational-biologyconsensus-algorithmlarge-language-modelsllmscanpyscrnascrnaseq-analysisseuratsingle-cell
9.58 score 641 stars 37 scripts 429 downloads