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What should I do?", "How do I handle \"API key not found\" errors?", "Why are some cell types not being correctly identified?", "Integration with Other Tools", "How does mLLMCelltype integrate with Seurat?", "Can I use mLLMCelltype with Scanpy/AnnData in R?", "How can I combine mLLMCelltype with traditional annotation methods?", "Advanced Usage", "How can I customize the prompts used by mLLMCelltype?", "Can I add my own custom LLM models?", "How can I contribute to mLLMCelltype?", "Next Steps" ], "created": "2025-06-28 13:09:02", "modified": "2026-05-10 22:38:12", "commits": 13 }, { "source": "getting-started.Rmd", "filename": "getting-started.html", "title": "Getting Started with mLLMCelltype", "author": "Chen Yang", "engine": "knitr::rmarkdown", "headings": [ "Getting Started with mLLMCelltype", "Basic Workflow", "Loading the Package and Setting Up API Keys", "Setting Up API Keys", "Input Data Requirements", "1. Data Frame Format", "2. Seurat FindMarkers Output", "3. 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